PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553956.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 293aa    MW: 33176.5 Da    PI: 7.1004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding68.41.3e-213784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llv++v+++G g+W+++a++ g++R++k+c++rw +yl
   XP_010553956.1 37 KGPWTPEEDKLLVEYVTLHGEGRWSSVAKCAGLNRSGKSCRLRWVNYL 84
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1690134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+e++++++ ++G++ W+tIar+++ gRt++++k++w+++
   XP_010553956.1  90 RGQITPLEEEIIIELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 134
                      67889*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4563284IPR017930Myb domain
SuperFamilySSF466892.58E-3235131IPR009057Homeodomain-like
SMARTSM007175.8E-183686IPR001005SANT/Myb domain
PfamPF002491.1E-193784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-253891IPR009057Homeodomain-like
CDDcd001672.33E-143984No hitNo description
PROSITE profilePS5129424.93385139IPR017930Myb domain
SMARTSM007175.3E-1589137IPR001005SANT/Myb domain
PfamPF002492.6E-1490134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2492138IPR009057Homeodomain-like
CDDcd001672.65E-1194135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVDWGIHHHD HDHDHDHHHH QHDQHQKQQQ QQDGWRKGPW TPEEDKLLVE YVTLHGEGRW  60
SSVAKCAGLN RSGKSCRLRW VNYLRPGLKR GQITPLEEEI IIELHSLWGN KWSTIARYLP  120
GRTDNEIKNY WRTHFKKKEK SSRKQDNKIK KSQSRKTQTQ MPTKPQSQPA QDDVTTKLNP  180
ELGIAPSEGQ YNNVPDQHYT TTTAVAPCSS DQSMMIDGGN NYLWGSLWGL DGDNCFLSGG  240
NDDQTAGVNV DGNVNKFITV DDNYVQGFQG LSSCGSPGDF GYGSASYTGG FSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25371387107B-MYB
1h8a_C1e-242413814127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553956.10.0PREDICTED: myb-related protein 340
TrEMBLQ9LRU51e-88Q9LRU5_ARATH; MYB transcription factor
STRINGXP_010553956.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-84myb domain protein 121