PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553947.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 295aa MW: 33159.6 Da PI: 6.4101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.7	1.9e-17	38	87	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++L +l+P++ ++K +Ka+ L +++eYI+ Lq XP_010553947.1 38 RSKHSETEQRRRSKINERFQTLMDLIPQN----DQKRDKASFLLEVIEYIRFLQ 87 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-22	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-19	35	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.882	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-15	38	91	No hit	No description
Pfam	PF00010	5.7E-15	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-13	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKSPDLGEQE DVYVYDNLPS RNNSSEGEVT KRKTSTYRSK HSETEQRRRS KINERFQTLM 60 DLIPQNDQKR DKASFLLEVI EYIRFLQEKL QMHESSQQMW NQGPTKLIPW RNNHRPAEDV 120 SDHSQSIKSW SSHEKGVAPP EMLADMQNSL DADVDSTAVF RSLNQNPTSG VPYYVPADPS 180 LQFVQQDSCQ VRHSSGSAVC SMSEPSNSKD KTSVGLSKAY SQGVLSTLTE ALKSSSVNLS 240 ETMISVQLSL AKSSDPEASA SVDSANGNRD REMGSQAETK SFYEESKHAQ KRIRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553947.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553947.1	0.0	PREDICTED: transcription factor BIM3-like isoform X1
Swissprot	Q9FMB6	1e-101	BIM3_ARATH; Transcription factor BIM3
TrEMBL	V4NL63	1e-100	V4NL63_EUTSA; Uncharacterized protein
STRING	XP_010553947.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16131	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-103	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]