PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553798.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 611aa    MW: 66544.3 Da    PI: 5.5745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.31.5e-1382456021374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        +pp++ s    s++l++   f+e++P+lkf+h
  XP_010553798.1 245 LVQALMACAEAVQKNNLSLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR-------LCPPQDHS---LSDTLQM--HFYETCPYLKFAH 327
                     689****************************************************.......33555554...6777665..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+ +g +La++Ae+++v+fef+ +va++l+dle
  XP_010553798.1 328 FTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNSDYLHDVGCNLAQLAEAIHVEFEFRGFVANSLADLE 422
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p  +E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqe++hns+ +l+rf+e+l+yys+lfdsle     ++++++
  XP_010553798.1 423 ASMLELSPseNESVAVNSVFELHKLLARPGAMEK----VLDVVKRTKPDIFTVVEQESNHNSPALLDRFTESLHYYSTLFDSLEGV---ANSQDK 510
                     *******9999***********************....*********************************************999...599999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvaceg++r+erhetl +Wr r+ +aGF+pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_010553798.1 511 VMSEVYLGKQICNVVACEGSDRVERHETLTQWRTRFCSAGFSPVQLGSNAFKQASMLLALFNgGEGYRVEEKDGCLMLGWHTRPLIATSAWK 602
                     *******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.6E-3537110No hitNo description
PfamPF120412.0E-3437104IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.958219581IPR005202Transcription factor GRAS
PfamPF035145.3E-136245602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MKRYHDHFQQ PARLPDPASS SSSSSGKMLL EEDGGMDELL AVLGYKVKSS EMAEVAQKLE  60
QLEEMMGHFQ EDGLSHFATE TVHYNPSELY TWLDSMLSEF NPSTSAVGAG SLGPLLSAPL  120
NMDTSFLSGA ESSTVSSIGL GAPNQHSRGF IGPSSSDYEL KAIPGNAIYP QPPPRTRTQF  180
VFDSSSSSNH GGDANKRLKC SISEYAPTPT AVQIGGCAGT RITTTAAEST RAVVLVDSQE  240
NGIRLVQALM ACAEAVQKNN LSLAEALVKQ IGFLAVSQAG AMRKVATYFA EALARRIYRL  300
CPPQDHSLSD TLQMHFYETC PYLKFAHFTA NQAILEAFEG KKRVHVIDFS MNQGLQWPAL  360
MQALALRPGG PPVFRLTGIG PPAPDNSDYL HDVGCNLAQL AEAIHVEFEF RGFVANSLAD  420
LEASMLELSP SENESVAVNS VFELHKLLAR PGAMEKVLDV VKRTKPDIFT VVEQESNHNS  480
PALLDRFTES LHYYSTLFDS LEGVANSQDK VMSEVYLGKQ ICNVVACEGS DRVERHETLT  540
QWRTRFCSAG FSPVQLGSNA FKQASMLLAL FNGGEGYRVE EKDGCLMLGW HTRPLIATSA  600
WKLAVKQVVA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6224060114378Protein SCARECROW
5b3h_A3e-6224060113377Protein SCARECROW
5b3h_D3e-6224060113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553798.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A1J3II220.0A0A1J3II22_NOCCA; DELLA protein RGA2
STRINGXP_010553798.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein