PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553663.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 362aa    MW: 40417.6 Da    PI: 6.5194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09222269455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i ++++ L+el+P +    +k   K  +L + ++Y++sLq
  XP_010553663.1 222 CHSLAERVRREKISKRMSLLQELVPGC----NKITGKTVMLDEIINYVQSLQ 269
                     699************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-16216285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.77E-9216273No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15217286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.291218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-9224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDGEIGSKHG DETGISEVDM ISMPFYTKAD PFFPSADWDH VVSAMVSSNG LSSSHCISLV  60
TDNQEMSSSF AHYESGSGSG YLDISTSLRP YRNMPECNQT AHCLGSDKKG ESEGRLMRTG  120
EEVHEGHQVS EDGVLGASPC RKRLQLETKM VPSLQWNKKA VEESRKDDQI EDQRQKKTES  180
ERNMVEDSGA KKPTNKKNSG SREPPKENYI LVRARRGRAT SCHSLAERVR REKISKRMSL  240
LQELVPGCNK ITGKTVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNIDI DRILAKDILG  300
SRDRNRSMFR LNAVMNPLPP FGIIQGTIPN LLTTNPQLDP APQTEPEAEI QSLYRIGFVS  360
NS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553663.10.0PREDICTED: transcription factor bHLH74-like isoform X2
SwissprotQ6NKN91e-131BH074_ARATH; Transcription factor bHLH74
TrEMBLR0I6X01e-134R0I6X0_9BRAS; Uncharacterized protein
STRINGXP_010553662.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]