PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553534.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 655aa    MW: 74304.3 Da    PI: 7.067
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-094404771954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  XP_010553534.1 440 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 477
                     564459******************************88 PP
2BELL104.47.9e-34300371172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++elqk+kakLls+l+e+d+rY++y+eq+++ +++Fea+ag+ +a+ Yt+lA ka+SrhFrcL+d +++qi
  XP_010553534.1 300 EFMELQKRKAKLLSMLDEIDRRYHHYREQMRAAAAAFEAAAGVVAAETYTALAAKAMSRHFRCLRDSVVGQI 371
                     679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.3E-43223367IPR006563POX domain
SMARTSM005742.3E-53229369IPR006563POX domain
PROSITE profilePS5007111.904418481IPR001356Homeobox domain
CDDcd000862.58E-11421482No hitNo description
SMARTSM003892.0E-9421485IPR001356Homeobox domain
SuperFamilySSF466891.45E-17422489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28424487IPR009057Homeodomain-like
PfamPF059208.8E-18438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MARDFYSSEE IWSSNNTPAS NNHHNDHQRD HQDHEMVNQI QGFHDTTNHH HQIFGLNTNT  60
GLIDFSKQQN HHHHHHHQNG MASGVEEASG GENLLLEDSS PPSMRISNGN FPCEVNEERA  120
PPPIATRPSQ GLSLSLSSSN PTSISLPSFE LRPQTQQHDH VLTTRVVGSS RQGYFGKLHQ  180
NLQHTQMMMM TMMMNNNSDI NTANHHRHHH HQQQQHGHNQ FQIVRSKYLV PAQELLNEFC  240
SLGTKQSDEE TVMMKQKIEK GKQQWESNNN NDNGSDHHHH HHESASTSSR KHVPPLHSLE  300
FMELQKRKAK LLSMLDEIDR RYHHYREQMR AAAAAFEAAA GVVAAETYTA LAAKAMSRHF  360
RCLRDSVVGQ IQATKKAMGE REDPGAPGTT RGETPRLRLL DQALRQQKVY RQMSLVDPHP  420
WRPQRGLPER AVSILRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK  480
PMIEEMYSEE TRGERNESIN HQENIMVNPV LTDPKPELNP IMNRADPGSL SSIITNPSSK  540
THHQGTTPFG SSFDFSLYGH QAVTYGGDSS DMGFEDRTRG VSLTLGLQRH NDGNGGVSLA  600
FSPAAQGAPL FFRDHVEDYH QQGSVQYSTT HLDGDDAQNL PYRNLMGAQL LHDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16427485563Homeobox protein Meis2
3k2a_B6e-16427485563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553534.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A397ZSP30.0A0A397ZSP3_BRACM; Uncharacterized protein
TrEMBLM4E9P10.0M4E9P1_BRARP; Uncharacterized protein
STRINGXP_010553534.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-174TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]