PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 630aa MW: 70266.1 Da PI: 5.4609 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 2.9e-10 | 431 | 477 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +++R +++N++f Lr+++P+ + K++K+++L ++eY+++L+ XP_010553519.1 431 NHALSDKKRSEKLNQRFMILRSIIPSiN------KVDKVSVLDDTIEYLQELE 477 799999********************77......****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.6E-54 | 13 | 201 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.67E-15 | 418 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.986 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-8 | 431 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-10 | 431 | 481 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 431 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 433 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MVAGQNRTVP ENLKKQLAVA VRSIQWSYAI FWSVSASEPG VLEWTDGYYN GDIKTRKTIQ 60 TTAEIRADQL GLQRSEQLRE LFDSLSAGES SAGSQVLRRS SASALAPEDL TDTEWYYLVC 120 MSSVFSIGEG LPGRTLESGE TIWLCNAHNA DSNVFSRSLL AKSASVQTVV CFPFLGGVVE 180 IGTTEHITED LNLIQYVQTS FLEAPPYTTI STRLDYHEVL DPQQILGDEK YVPLFGNDFP 240 VNSPTKTTNG FEQELEDHDS LVAEAINGGA SQVQSWQLVD EELSNCIHQS LNSSDCISQT 300 FVEPGRVACG SRKGRVQETR QRLGQIREQN HVNLAAKNDD LHYQGVLSMV FKTTHQLILG 360 PQFQNCDKRS SFTRWKRGAF VKFIGPNTGG NMPQKMLKKI IFEVPRMDKN ELFFDTPDDS 420 GARVGDELAA NHALSDKKRS EKLNQRFMIL RSIIPSINKV DKVSVLDDTI EYLQELERRV 480 QELESCRELT DTETRMAKRK KPNEAGERTS ATCRDHTDRT GNGKRILVSK RRNSDVEDAE 540 PDSSSAGLTD NLRIGLVGNE VVIELRCAWR EGVLLEIMDV ISDLNLDSHS VQSSTGDGFL 600 CLTVKCKHKG SKIATPGMIK EALQRVAWIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-16 | 11 | 201 | 7 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-16 | 11 | 201 | 7 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-16 | 11 | 201 | 7 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-16 | 11 | 201 | 7 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553519.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553516.1 | 0.0 | PREDICTED: transcription factor EGL1-like isoform X1 | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A087GT19 | 0.0 | A0A087GT19_ARAAL; Uncharacterized protein | ||||
STRING | XP_010553516.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |