PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553488.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 270aa    MW: 30371.2 Da    PI: 7.9326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-1472124155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r+ h  +Er+RR+++ s f +Lr+llP       ++K s ++ + +Av+YI++Lq
  XP_010553488.1  72 KRMRHRDVERQRRQEVSSLFKNLRSLLPFqY---IKGKRSSSDHVLEAVNYIRDLQ 124
                     799**************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-1568138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-1269128No hitNo description
PROSITE profilePS5088814.27871123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1172139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-577129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDYIPSPDFV SSMFISDLAD QDGFGFEFPD PTAFISFQNS ETRNPTVDNG AEDDRKRNGC  60
EVFETRETEK SKRMRHRDVE RQRRQEVSSL FKNLRSLLPF QYIKGKRSSS DHVLEAVNYI  120
RDLQKKIKEL DEKKDQIKKL SDRENIASGS PPSSTEECSS SSSLSLSPSS SSSSSSSSSS  180
SCSCAEDKHV SVVVMPCLGG FEIVLSCCFR YKLCLSSVLQ VLAREKGFNV VRCTSTALQS  240
RLIHSIFGQA DQGRNINLVE LQDKIMKMRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17183KRMRHRDVERQRR
27283RMRHRDVERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553488.10.0PREDICTED: transcription factor bHLH125
SwissprotQ9LQ082e-71BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A087HEK22e-72A0A087HEK2_ARAAL; Uncharacterized protein
TrEMBLV4KGY22e-72V4KGY2_EUTSA; Uncharacterized protein
STRINGXP_010553488.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.12e-68bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]