PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G62975.1 | ||||||||
Common Name | BHLH125, EN2, F16P17.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29214.5 Da PI: 8.8474 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.3e-14 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ s f +Lr+llP ++K s ++ +Av+YIk+Lq AT1G62975.1 74 KKMKHRDIERQRRQEVSSLFKRLRTLLPFqY---IQGKRSTSDHIVQAVNYIKDLQ 126 6899*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.64E-13 | 71 | 130 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-15 | 72 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.634 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-12 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-11 | 74 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-4 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDCVPSLFMP DSTYEDGLLF SDSFLLSPFI SYQNNDVFHS ITNKIGGSNK KRSLCDITYG 60 ANEANKNDDD RESKKMKHRD IERQRRQEVS SLFKRLRTLL PFQYIQGKRS TSDHIVQAVN 120 YIKDLQIKIK ELNEKRNRVK KVISATTTTH SAIEECTSSL SSSAASTLSS SCSCVGDKHI 180 TVVVTPCLVG VEIIISCCLG RNKSCLSSVL QMLAQEQRFS VVSCLSARRQ QRFMHTIVSQ 240 VEDGKQINIL ELKDKIMTM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.70486 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G62975 | |||||
AtGenExpress | AT1G62975 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G62975.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G62975 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228036 | 0.0 | AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04. | |||
GenBank | BT006408 | 0.0 | BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_683462.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9LQ08 | 0.0 | BH125_ARATH; Transcription factor bHLH125 | ||||
TrEMBL | C0SV13 | 0.0 | C0SV13_ARATH; Uncharacterized protein At1g62975 (Fragment) | ||||
STRING | AT1G62975.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 | Representative plant | OGRP1638 | 8 | 38 |
Link Out ? help Back to Top | |
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Phytozome | AT1G62975.1 |
Entrez Gene | 842600 |
iHOP | AT1G62975 |
wikigenes | AT1G62975 |
Publications ? help Back to Top | |||
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