PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553241.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 277aa    MW: 32577.8 Da    PI: 6.861
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.54.8e-251698186
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W+ +e++++i +r e+++++ ++k++k lWe vs+kmr++gf rsp+qCk+kw+nl +r+k ++++e +    +++++p++d+++
  XP_010553241.1 16 QWSVEETKEMIGIRAELDQTFMETKRNKLLWEVVSNKMRDKGFLRSPEQCKCKWKNLFTRFKGCETMEPEM---ARQQFPFYDDMQ 98
                    7********************************************************************96...56689*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.67E-211580No hitNo description
PfamPF138373.0E-191698No hitNo description
PROSITE profilePS500907.2821773IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAVEATAGGG GDRFPQWSVE ETKEMIGIRA ELDQTFMETK RNKLLWEVVS NKMRDKGFLR  60
SPEQCKCKWK NLFTRFKGCE TMEPEMARQQ FPFYDDMQVI FTSRMQRMLW AEAEGGGGGV  120
GTSGKKKASS EQFSSDEEDE NVNEEMVSEE LIGDVISRNP KKQNPRKNVQ KKRKGGLSSG  180
SSYGNMGMRE VLEEFVRQQL RMEREWREAW EAREKERAEK EEEWRRKMED LEKERLAMER  240
MWREKEEQRR AREEARAEKR DALINALLSK FTREGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A7e-131794784DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164173PRKNVQKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553241.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553239.10.0PREDICTED: trihelix transcription factor GT-3b isoform X1
RefseqXP_010553240.10.0PREDICTED: trihelix transcription factor GT-3b isoform X2
SwissprotO804501e-103TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A0D3BQZ21e-118A0A0D3BQZ2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BT131e-118A0A3P6BT13_BRAOL; Uncharacterized protein
STRINGXP_010553239.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-78Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]