PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 300aa MW: 35449.9 Da PI: 7.3084 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.3 | 5.6e-25 | 39 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++++i +r e+++++ ++k++k lWe vs+kmr++gf rsp+qCk+kw+nl +r+k ++++e + +++++p++d+++ XP_010553240.1 39 QWSVEETKEMIGIRAELDQTFMETKRNKLLWEVVSNKMRDKGFLRSPEQCKCKWKNLFTRFKGCETMEPEM---ARQQFPFYDDMQ 121 7********************************************************************96...56689*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.13E-21 | 38 | 103 | No hit | No description |
Pfam | PF13837 | 3.5E-19 | 39 | 121 | No hit | No description |
PROSITE profile | PS50090 | 7.282 | 40 | 96 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDSHHHHLHH LQYLHHHQTQ TQSMAVEATA GGGGDRFPQW SVEETKEMIG IRAELDQTFM 60 ETKRNKLLWE VVSNKMRDKG FLRSPEQCKC KWKNLFTRFK GCETMEPEMA RQQFPFYDDM 120 QVIFTSRMQR MLWAEAEGGG GGVGTSGKKK ASSEQFSSDE EDENVNEEMV SEELIGDVIS 180 RNPKKQNPRK NVQKKRKGGL SSGSSYGNMG MREVLEEFVR QQLRMEREWR EAWEAREKER 240 AEKEEEWRRK MEDLEKERLA MERMWREKEE QRRAREEARA EKRDALINAL LSKFTREGSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 1e-12 | 36 | 117 | 3 | 84 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 196 | PRKNVQKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553239.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b isoform X1 | ||||
Refseq | XP_010553240.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b isoform X2 | ||||
Swissprot | O80450 | 1e-105 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A0D3BQZ2 | 1e-127 | A0A0D3BQZ2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BT13 | 1e-127 | A0A3P6BT13_BRAOL; Uncharacterized protein | ||||
STRING | XP_010553239.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-78 | Trihelix family protein |
Publications ? help Back to Top | |||
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