PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553212.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 347aa    MW: 38692.6 Da    PI: 5.0974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1882141155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +g+WvAeIr+p+++g    +r  +r +lg+f t  eAa a+++a+k+++g
  XP_010553212.1  82 CRFRGVRQRV-WGKWVAEIREPVNRGsdsaRRggRRLWLGTFATSAEAAMAYDEAAKAMYG 141
                     689*****99.**********9998889985569************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.70E-2782150No hitNo description
PfamPF008473.6E-1482141IPR001471AP2/ERF domain
PROSITE profilePS5103221.33883149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2683150IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1883150IPR016177DNA-binding domain
SMARTSM003801.5E-3183155IPR001471AP2/ERF domain
PRINTSPR003671.6E-88495IPR001471AP2/ERF domain
PRINTSPR003671.6E-8115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEKLESGASK PSLSVSVVSS GNNINSPRRR RRDGEAVEAT LQRWAVRNQD LTGTTGSVRR  60
VPAKGSKKGC MRGKGGPDNP VCRFRGVRQR VWGKWVAEIR EPVNRGSDSA RRGGRRLWLG  120
TFATSAEAAM AYDEAAKAMY GPLARLNFPD GCDNEHEKIA EEEGSRSYLL EHVKLEGSEQ  180
DPFQEQDKTE NQGSMSVNLI HVNQEHHGNV SGNFRDAGYE MSTRYGDGYL LENDIEHDLL  240
QEYQPGRNKT GDLGSISQSE LGIAGSLDAQ GKLIESPLQD RLRANQEMWY DEPFDPQNPG  300
AMSNWTEAAD FETDKRFQVF GPRPDMGPGQ EQVEFDHYVG FPEFFGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1484149663ATERF1
3gcc_A5e-1484149663ATERF1
5wx9_A7e-14831491472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553213.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553214.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553215.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553217.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553218.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553219.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553220.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553221.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553224.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553225.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553226.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_010553227.10.0PREDICTED: dehydration-responsive element-binding protein 2C
TrEMBLA0A078JZV85e-54A0A078JZV8_BRANA; BnaCnng75020D protein
TrEMBLA0A0D3BQW95e-54A0A0D3BQW9_BRAOL; Uncharacterized protein
TrEMBLA0A3N6TUG65e-54A0A3N6TUG6_BRACR; Uncharacterized protein
STRINGXP_010553212.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.13e-37ERF family protein