PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553113.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 300aa    MW: 35904.1 Da    PI: 6.5243
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.3e-2438120186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+ +L+++r+e+++++ ++k++k lWe v++km+++gf r++ qCk+kw+nl +r+k ++++e +     ++++p++++++
  XP_010553113.1  38 QWSVQETEELLRIREELDQTFMETKRNKLLWEVVASKMSDKGFVRTADQCKSKWKNLVTRFKGCETTEPEA---MRKQFPFYNEIQ 120
                     7********************************************************************85...56689****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.5E-63597IPR001005SANT/Myb domain
CDDcd122033.89E-2137102No hitNo description
SuperFamilySSF466892.96E-537102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-53894IPR009057Homeodomain-like
PfamPF138373.3E-1938121No hitNo description
PROSITE profilePS500908.1773995IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDRHNPYQHH HHQLHHQQQL QHLPAVDLSG GGGERIPQWS VQETEELLRI REELDQTFME  60
TKRNKLLWEV VASKMSDKGF VRTADQCKSK WKNLVTRFKG CETTEPEAMR KQFPFYNEIQ  120
TIFSARMQRM LWSDTAEAST SKRKPQISSD DDEEDEDEDD PEHEINDELL SLVETHQKGT  180
TVMTSNPRKR AKKAKGETPT TTTSGSSVKE VLEEFMRQMV KTEKEWREAC ERRERERERR  240
EREWRRRMAE LEEERVAAER RWMEKEEERR VREEVRAQKR DLLIDALLTR LNTDHHRPSN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553113.10.0PREDICTED: trihelix transcription factor GT-3a
SwissprotQ9SDW01e-105TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0D3AZB11e-109A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZXC61e-109A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGXP_010553113.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-70Trihelix family protein