PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553041.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 245aa    MW: 27950.8 Da    PI: 9.033
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP66.14.6e-2116861671
         E2F_TDP 16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                    +++k e+ +i+t++e+a++++s+               ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_010553041.1 16 VCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 86
                    899*9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.0E-20486IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-281188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-161386IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.71E-141487IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011383.9E-4199243IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-36101219No hitNo description
PfamPF087814.5E-33102225IPR014889Transcription factor DP, C-terminal
CDDcd144581.83E-29104199IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKMKMEKKGQ SRSAGVCQKL EAKKIITYKE IADDIISDFG TMQNDTLGSS EEFNEKNIRR  60
RVYDALNVFM ALEIITRDKK EIRWKGLLVT CKKDVEEVKY MTFQAERTKL VSSVQKKAAY  120
LKELEEKVSS SQNLMSRNQQ VVEKSKGPAE GFTLPFILVQ TSPHATVEVE ISEDMQLVHF  180
DFSSTPFTLH DDGYILKLMH QQKLQQKTRH HHPSQHSSAH SSSTSVFSAT TGPVCWNTYS  240
ASTTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-20787389PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553041.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553041.10.0PREDICTED: transcription factor-like protein DPA isoform X6
SwissprotQ9FNY31e-106DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9411e-106V4L941_EUTSA; Uncharacterized protein
STRINGXP_010553035.11e-148(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-90Transcription factor DP