PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | E2F/DP | ||||||||
Protein Properties | Length: 259aa MW: 29438.6 Da PI: 9.0329 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 67.9 | 1.3e-21 | 28 | 100 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +l++k e+ +i+t++e+a++++s+ ++kn+rRR+YD+lNV++al++i++ +k+eirwkg XP_010553040.1 28 SSLCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 100 3589999999******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.1E-29 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.4E-21 | 13 | 100 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.75E-14 | 28 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-16 | 28 | 100 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SMART | SM01138 | 3.9E-41 | 113 | 257 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.4E-36 | 115 | 233 | No hit | No description |
Pfam | PF08781 | 5.2E-33 | 116 | 239 | IPR014889 | Transcription factor DP, C-terminal |
CDD | cd14458 | 1.22E-29 | 118 | 213 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKMKMEKKGQ SRSAGGGLRQ FSVLDLLSSL CQKLEAKKII TYKEIADDII SDFGTMQNDT 60 LGSSEEFNEK NIRRRVYDAL NVFMALEIIT RDKKEIRWKG LLVTCKKDVE EVKYMTFQAE 120 RTKLVSSVQK KAAYLKELEE KVSSSQNLMS RNQQVVEKSK GPAEGFTLPF ILVQTSPHAT 180 VEVEISEDMQ LVHFDFSSTP FTLHDDGYIL KLMHQQKLQQ KTRHHHPSQH SSAHSSSTSV 240 FSATTGPVCW NTYSASTTY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-22 | 7 | 101 | 3 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553040.1 | 0.0 | PREDICTED: transcription factor-like protein DPA isoform X5 | ||||
Swissprot | Q9FNY3 | 1e-113 | DPA_ARATH; Transcription factor-like protein DPA | ||||
TrEMBL | V4L941 | 1e-113 | V4L941_EUTSA; Uncharacterized protein | ||||
STRING | XP_010553035.1 | 1e-148 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02470.3 | 5e-97 | Transcription factor DP |