PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010553039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 275aa MW: 31311.7 Da PI: 6.7926 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 65.9 | 5.2e-21 | 46 | 116 | 16 | 71 |
E2F_TDP 16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++k e+ +i+t++e+a++++s+ ++kn+rRR+YD+lNV++al++i++ +k+eirwkg XP_010553039.1 46 VCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 116 899*9999******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.1E-18 | 35 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.26E-14 | 44 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-27 | 45 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.4E-16 | 46 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SMART | SM01138 | 3.9E-41 | 129 | 273 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.92E-36 | 131 | 249 | No hit | No description |
Pfam | PF08781 | 6.1E-33 | 132 | 255 | IPR014889 | Transcription factor DP, C-terminal |
CDD | cd14458 | 8.75E-30 | 134 | 229 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MPCYSKQEKW NPLSTTGSFA GLEISSFVLI LILDDNINEL LIVFPVCQKL EAKKIITYKE 60 IADDIISDFG TMQNDTLGSS EEFNEKNIRR RVYDALNVFM ALEIITRDKK EIRWKGLLVT 120 CKKDVEEVKY MTFQAERTKL VSSVQKKAAY LKELEEKVSS SQNLMSRNQQ VVEKSKGPAE 180 GFTLPFILVQ TSPHATVEVE ISEDMQLVHF DFSSTPFTLH DDGYILKLMH QQKLQQKTRH 240 HHPSQHSSAH SSSTSVFSAT TGPVCWNTYS ASTTY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-20 | 44 | 117 | 17 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010553039.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553039.1 | 0.0 | PREDICTED: transcription factor-like protein DPA isoform X4 | ||||
Swissprot | Q9FNY3 | 1e-101 | DPA_ARATH; Transcription factor-like protein DPA | ||||
TrEMBL | V4L941 | 1e-100 | V4L941_EUTSA; Uncharacterized protein | ||||
STRING | XP_010553035.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02470.3 | 4e-85 | Transcription factor DP |