PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 147aa MW: 16235.5 Da PI: 10.1057 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.5e-10 | 64 | 97 | 4 | 39 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 ++ +Ed+l+++++++lG++ W++Ia +++ gR++ q XP_010552728.1 64 FSGDEDDLIIKLHALLGNR-WSLIAGRLP-GRSDDQ 97 7889***************.*********.***976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.31E-13 | 41 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 41 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.023 | 56 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-8 | 62 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-7 | 64 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-13 | 69 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MRSLTTQEDM KRGALIMSEQ VNRKLIHTFR YRRGRLPLGG VRCGKSCRAR RINHARPELK 60 TGGFSGDEDD LIIKLHALLG NRWSLIAGRL PGRSDDQPHN NAMADIAYKA DDESSASHST 120 GPSDHGIVPV DPMPPTASLL ERIINVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552728.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552728.1 | 1e-105 | PREDICTED: transcription repressor MYB6 isoform X4 | ||||
Swissprot | Q38851 | 6e-24 | MYB6_ARATH; Transcription repressor MYB6 | ||||
Swissprot | Q9SZP1 | 1e-23 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | I3S556 | 3e-26 | I3S556_LOTJA; Uncharacterized protein | ||||
STRING | XP_010552725.1 | 1e-96 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-26 | myb domain protein 6 |