PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GeBP | ||||||||
Protein Properties | Length: 362aa MW: 40208.4 Da PI: 8.7597 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 91.6 | 8.8e-29 | 161 | 260 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifels 92 l++r++s eDei+lL+G+++f+++ g + +d +d+f+ fv+k+++f+++k q+++Ki+rL+k+f+k v+k k+g++ +fsk+hdq++f+ls XP_010552533.1 161 LIERIFSHEDEIALLKGILEFASRVG-NIYDCMDEFCIFVNKHMNFEANKAQISNKIKRLRKRFEKSVEKsiwkGKKGEDCVFSKAHDQESFDLS 254 578******************99999.99****************************************999989******************** PP DUF573 93 kkiWgs 98 kkiWg+ XP_010552533.1 255 KKIWGT 260 ****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.0E-25 | 163 | 259 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEPKHPENSS HSVQKEAETV LVAAPKARES KAGSMASSGR ADLVENPHTS STEEEEDDEE 60 YSSESEGASG SEAESKSESE SERIKHDAAK PVAAKQAVEA REVEKPRSVV KETRRAAAKR 120 PMTVLEAKGN ELNPAKKMKG VQEPEEHKGK KSSADASKKQ LIERIFSHED EIALLKGILE 180 FASRVGNIYD CMDEFCIFVN KHMNFEANKA QISNKIKRLR KRFEKSVEKS IWKGKKGEDC 240 VFSKAHDQES FDLSKKIWGT NGVMQSTTKS TKGQGKNWKP RVLAGKDVIP LLDAKNVVGI 300 DEFAMVEGWE MAEGSTKRKL EATWKKIQAL QMELSLLKTK FAGKATNLIF DALKANGSHF 360 DN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552533.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552533.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like | ||||
STRING | XP_010552533.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 8e-41 | DNA-binding storekeeper protein-related transcriptional regulator |