PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552441.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 288aa    MW: 31492.5 Da    PI: 6.0023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.1e-1617991397
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    s+ lvlp +f+  ++++k+ + + tl d++grsW v+++   +++ ++  +++GW++F+  + L  gDf++F +dg+s+f   v+vf
  XP_010552441.1 17 SDHLVLPLEFV--NMLEKPLPHEATLHDQTGRSWIVTITTgdERTVSGLCMKDGWRDFAGHHALAYGDFLLFGYDGESDF--SVSVF 99
                    4669*******..556677999****************65544444448999************************9999..77776 PP
2B343.17.8e-141962721794
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-...SSSEE..EE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld...grsefelvv 94 
                      ++k f+++hg++   + ++ l d++g++W vk+     ++++ +t+GW+eF k+++L +  +++F+++   g++++  +v
  XP_010552441.1 196 GISKAFLKAHGIQ--LEPKIELCDQEGEKWPVKV--YSAGRHTSFTSGWSEFRKSHKLGTSNSCLFEFVlgvGNKCKAVHV 272
                     589*******877..4449***************..88888899***********************54212445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.5075102IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-186102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-11799No hitNo description
Gene3DG3DSA:2.40.330.109.7E-187102IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-107102IPR003340B3 DNA binding domain
PfamPF023621.3E-121699IPR003340B3 DNA binding domain
SMARTSM010195.0E-8187278IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15193272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-16195273IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-12196262IPR003340B3 DNA binding domain
CDDcd100176.12E-11197260No hitNo description
PROSITE profilePS5086310.08197278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVKAVEFVRV YVHPSCSDHL VLPLEFVNML EKPLPHEATL HDQTGRSWIV TITTGDERTV  60
SGLCMKDGWR DFAGHHALAY GDFLLFGYDG ESDFSVSVFA SDGFKKHSGI PTDCFSHPVK  120
EEPDVEPENV PDTSKPDLGG RNSFGTPVIG TSQAQTGEMT PVPVIKCEEF ELGEADYILL  180
KPETCGFTGT HGDTGGISKA FLKAHGIQLE PKIELCDQEG EKWPVKVYSA GRHTSFTSGW  240
SEFRKSHKLG TSNSCLFEFV LGVGNKCKAV HVQISGGRSR SHVKCSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552441.10.0PREDICTED: putative B3 domain-containing protein At5g66980
STRINGXP_010552441.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-26B3 family protein