PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552351.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 170aa    MW: 19617.8 Da    PI: 6.801
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.3e-1477135563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +++rrk++NRe+ArrsR RK+  ++eL   v  L ++N++L ++l++ ++  +k+ +e+
  XP_010552351.1  77 RKQRRKISNRESARRSRMRKQRHLDELLSQVMYLMNQNHQLLEKLNHASESHEKVLQEN 135
                     689***************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-1373137IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.85275138IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-1176130No hitNo description
SuperFamilySSF579597.74E-1277126No hitNo description
PfamPF001706.9E-1277135IPR004827Basic-leucine zipper domain
CDDcd147021.94E-1778128No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQPATDVFSL SNYIISSNPS PYPSHFTIPS SFDLNGQIPN PFHGFQTTTA AQSVSFSSNN  60
STSDEAEEQQ INIINERKQR RKISNRESAR RSRMRKQRHL DELLSQVMYL MNQNHQLLEK  120
LNHASESHEK VLQENARLKE EATELRQMIT DMQIRSPFSC FGDDFRAESP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552351.11e-123PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-59BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A078JMC76e-81A0A078JMC7_BRANA; BnaA06g39730D protein
TrEMBLA0A397Z2R06e-81A0A397Z2R0_BRACM; Uncharacterized protein
STRINGXP_010552351.11e-123(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]