PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552258.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 434aa    MW: 46610.3 Da    PI: 10.2238
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-1587174186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k++++ +  +  s++++f++l+
  XP_010552258.1  87 CWSEGATAVLIDAWGERYLELSRGNLKQQHWKEVAEIVssreVYGKTPKTDIQCKNRIDTVKKKYKQEKARMSAG--GGPSRWVFFEKLD 174
                     7*************************************64333344466778*********************97..66778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-2685176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDDVDEIRSQ PSPAASGSPD QLSTPPVGRI TVTVASTGPP PYSPVSLSRQ DANALALTLP  60
VQASGGGGGG CSSNGRDGGG GGGREDCWSE GATAVLIDAW GERYLELSRG NLKQQHWKEV  120
AEIVSSREVY GKTPKTDIQC KNRIDTVKKK YKQEKARMSA GGGPSRWVFF EKLDRLIGST  180
TKIPTSSPSG GGGGSSNKIP MGIPMSSRSN LYRQGKVTPP PMSVDKLDRL IGATTRIHTA  240
SLGGGGGGSP NVAMGIPMSN RSNPFQPQGR TPLQQGIVKR NSESKRWHFR KRNAVDSDSE  300
SETEMSADSA DSLPPPPLTK RLKTEKKKDS GGGEANKWME LTRAILRLGE AYEQAETTKL  360
QQVVEMEKER MKFLKDLELQ RMQFFMKTQL EITQLGQHGR RNGGGGGGMG NTSKDHSSKN  420
NNIAAINNNS DVSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552258.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z71e-178A0A178V8Z7_ARATH; ASIL2
STRINGXP_010552258.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-131sequence-specific DNA binding transcription factors