PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YA | ||||||||
Protein Properties | Length: 305aa MW: 33813.8 Da PI: 9.6678 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.6e-32 | 179 | 235 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rakle+++kl +k r+pylheSRh hAl+R+RgsgGrF XP_010552243.1 179 NEPIYVNAKQYHAILRRRQHRAKLEAQNKL-IKIRRPYLHESRHLHALKRARGSGGRF 235 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.4E-36 | 177 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.018 | 178 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.3E-26 | 180 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.9E-24 | 181 | 203 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 183 | 203 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.9E-24 | 212 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MQEFHRRDSP YTSSFTVTCP SWGNSVSSNS NVQGSSMTDS LSLTMEVMST HFPEMKQSGF 60 QLQDQDSSST QSTGQSSAEV ASFGEHNRYG HNVVAHLSGY EENAGKPSGS YSKSTSSMVS 120 QDSVFPPAQA SWPLHCSEPP PHFGGFMASA YASQPMMPHP QMMGLIPSRM PLPHNLPENE 180 PIYVNAKQYH AILRRRQHRA KLEAQNKLIK IRRPYLHESR HLHALKRARG SGGRFLNVKK 240 LQETKPPSPA ANVHPHHFSK NPPDPGIRPS GICSGSGSIT SCTDMNSKHN NDMFQHPQFR 300 FSGYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-21 | 179 | 239 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552243.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552240.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
Refseq | XP_010552241.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
Refseq | XP_010552242.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
Refseq | XP_010552243.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
Swissprot | Q9LVJ7 | 1e-103 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | V4NPX0 | 1e-111 | V4NPX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010552240.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 9e-81 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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