PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551787.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 799aa MW: 91602.5 Da PI: 7.5811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.3	8.1e-21	78	152	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF+vr ++++s+++g++t+r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel XP_010551787.1 78 EFYTSYATRTGFKVRSGQMYRSRTDGTVTSRRFVCSKEGFQLN--------------SRTGCPAFVRVQRRDTGKWVLDQIQKEHNHEL 152 6*************************************876..............589*************************98 PP
2	FAR1	68.8	1.4e-21	239	315	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++kk+++g w v++l+++HnHel p XP_010551787.1 239 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKKQDSGGWIVDRLNKDHNHELEP 315 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-16	78	152	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.2E-17	239	315	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-27	411	503	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	685	721	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-8	696	723	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.2E-7	697	718	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MIGDLHLGWN IFSQDLQCTS VADTEPAGLN CGNNMVVKAY PLGMVRIMNN NGIGEDEGDS 60 GVEPYVGLEF DSVEEAREFY TSYATRTGFK VRSGQMYRSR TDGTVTSRRF VCSKEGFQLN 120 SRTGCPAFVR VQRRDTGKWV LDQIQKEHNH ELGGQVEETP RPPVVSQRPP APTKLAVSVP 180 HRPKMKVIDE SDKARSCPSG VISFKRFKGA GDGGDVQTQP NAAEPYAGLE FSSANEACQF 240 YQAYAEVVGF RVRIGQLFRS KVDGSITSRR FVCSKEGFQH PSRMGCGAYM RIKKQDSGGW 300 IVDRLNKDHN HELEPGKKNA GMKKITEDVT GGLDSVDLIE LNDFGNHIKK TRENTIGKEW 360 YPVLLEYFQT RQAEDTGFFY AVELDSNGSC MSVFWADSRA RFACSQFGDA VVFDTSYRKG 420 NYSVPFATFV GFNHHRQPVL LGCALISDES KEVFTWLFQT WLRAMSGHRP RSIVADQDLA 480 IQQAVAQIFP GTHHRYSSWQ IRAKERENLR AFPNEFKYEY EKCIYQTQTT VEFDTMWNAL 540 VNKYGLRDNM WLREMYEKRE NWVPAYLRGT FFGGIPINGN VEPFFGTSLD SLTPLREFVS 600 CYEQGLEQRR EEERKEDFNS YNLQPFLQTK EPVEEQCRRL YTLTIFRIFQ NELVQSYNYL 660 GLKTYEEGAI SRFLVRKCGN ENEKHAVTFS ATNLNVSCSC QMFEYEGLLC RHILKVFNLL 720 DMRELPSRYI LHRWTKNAEF GFVRDVESGV SSQDLKALMV WSLREAASKY IEFGTSSLEK 780 YKLAYEIMRE GGKKLCWQR

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MIGDLHLGWN IFSQDLQCTS VADTEPAGLN CGNNMVVKAY PLGMVRIMNN NGIGEDEGDS  60
GVEPYVGLEF DSVEEAREFY TSYATRTGFK VRSGQMYRSR TDGTVTSRRF VCSKEGFQLN  120
SRTGCPAFVR VQRRDTGKWV LDQIQKEHNH ELGGQVEETP RPPVVSQRPP APTKLAVSVP  180
HRPKMKVIDE SDKARSCPSG VISFKRFKGA GDGGDVQTQP NAAEPYAGLE FSSANEACQF  240
YQAYAEVVGF RVRIGQLFRS KVDGSITSRR FVCSKEGFQH PSRMGCGAYM RIKKQDSGGW  300
IVDRLNKDHN HELEPGKKNA GMKKITEDVT GGLDSVDLIE LNDFGNHIKK TRENTIGKEW  360
YPVLLEYFQT RQAEDTGFFY AVELDSNGSC MSVFWADSRA RFACSQFGDA VVFDTSYRKG  420
NYSVPFATFV GFNHHRQPVL LGCALISDES KEVFTWLFQT WLRAMSGHRP RSIVADQDLA  480
IQQAVAQIFP GTHHRYSSWQ IRAKERENLR AFPNEFKYEY EKCIYQTQTT VEFDTMWNAL  540
VNKYGLRDNM WLREMYEKRE NWVPAYLRGT FFGGIPINGN VEPFFGTSLD SLTPLREFVS  600
CYEQGLEQRR EEERKEDFNS YNLQPFLQTK EPVEEQCRRL YTLTIFRIFQ NELVQSYNYL  660
GLKTYEEGAI SRFLVRKCGN ENEKHAVTFS ATNLNVSCSC QMFEYEGLLC RHILKVFNLL  720
DMRELPSRYI LHRWTKNAEF GFVRDVESGV SSQDLKALMV WSLREAASKY IEFGTSSLEK  780
YKLAYEIMRE GGKKLCWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551787.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551798.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X5
Refseq	XP_019059066.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	XP_010551787.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]