PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551746.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 281aa    MW: 31785.8 Da    PI: 9.9923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g++R++k+c++rw +yl
   XP_010551746.1 14 KGLWSPEEDEKLLNHIAKYGHGSWSSVPKLAGLRRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding51.62.2e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+ l+++++++lG++ W+ Ia++++ gRt++++k++w++ 
   XP_010551746.1  67 RGAFSQEEQNLIIHLHALLGNR-WSQIASRLP-GRTDNEIKNFWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.56961IPR017930Myb domain
SuperFamilySSF466891.69E-3012108IPR009057Homeodomain-like
SMARTSM007173.3E-141363IPR001005SANT/Myb domain
PfamPF002491.8E-161461IPR001005SANT/Myb domain
CDDcd001678.54E-121761No hitNo description
PROSITE profilePS5129426.68162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2665116IPR009057Homeodomain-like
SMARTSM007175.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1567111IPR001005SANT/Myb domain
CDDcd001674.60E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRHPCCYKQ KLRKGLWSPE EDEKLLNHIA KYGHGSWSSV PKLAGLRRCG KSCRLRWINY  60
LRPDLKRGAF SQEEQNLIIH LHALLGNRWS QIASRLPGRT DNEIKNFWNS CLKKKLRQNK  120
GTDQIVNKPL NELQCDVSTD QRKQTSPESR PSSLSSQPNL VDTSVKSTFS MNPHENSTVS  180
HSGLRWFSTM MAPNPFFGFG SSSSSSPSSM AIPNFSVPNN WELNSTSVQS QRNGSISSFF  240
GNTVTKMSPV EDMNWAAEFL HYTTQNQSSQ DVFMAEVKPD I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-301111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551746.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH62e-99MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A087G9781e-97A0A087G978_ARAAL; Uncharacterized protein
TrEMBLA0A087G9792e-97A0A087G979_ARAAL; Uncharacterized protein
STRINGXP_010551746.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.15e-96myb domain protein 86