PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 201aa MW: 22353 Da PI: 8.9945 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 39 | 1.9e-12 | 6 | 30 | 33 | 57 |
ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRrev 57 +e+++++l C ACgCHRnFHRr + XP_010551545.1 6 AKETDPSSLLCVACGCHRNFHRRYN 30 34599*****************976 PP | |||||||
2 | Homeobox | 20.8 | 6.8e-07 | 116 | 175 | 1 | 56 |
TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+Rt+ft+eq e + +F+ + r ++++ + +k g++ ++ kvWF+N ++k + XP_010551545.1 116 KRSRTKFTEEQKEKMR-VFAeesdwMIRSCDETTLDDFCRKSGISRNVLKVWFHNNKYKFR 175 79************95.6774555556889999999999999*****************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-6 | 1 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51257 | 5 | 1 | 21 | No hit | No description |
Pfam | PF04770 | 4.6E-9 | 5 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.07E-17 | 107 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 107 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.539 | 113 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.07E-5 | 116 | 178 | No hit | No description |
Pfam | PF00046 | 9.7E-5 | 116 | 175 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.6E-21 | 116 | 172 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MASPAAKETD PSSLLCVACG CHRNFHRRYN PSEFLFTTPT PSPENHAPPP PSSPPPTYVA 60 SPVPRSFYAS GPHMLYNFSS GGVLRRPPDF NMNDEVKIQA VAVRSENSGL RTGQVKRSRT 120 KFTEEQKEKM RVFAEESDWM IRSCDETTLD DFCRKSGISR NVLKVWFHNN KYKFRGHRIS 180 DLNGGSDNVG AHVSGDGSSA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-16 | 116 | 171 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551545.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551545.1 | 1e-150 | PREDICTED: zinc-finger homeodomain protein 11 | ||||
Swissprot | Q9SEZ1 | 2e-46 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | D7KXH2 | 8e-45 | D7KXH2_ARALL; ATHB29/ZFHD1 | ||||
STRING | XP_010551545.1 | 1e-149 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-40 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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