PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551435.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 427aa    MW: 47747.3 Da    PI: 6.5785
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.4e-2179122245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     + en+  rq tf+kR++gi+KKA+ELS+LCd++v +++fs++gk
  XP_010551435.1  79 KLENTNGRQATFAKRKHGIMKKANELSILCDIDVVLLMFSPSGK 122
                     6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-2970129IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.12370122IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2471162IPR002100Transcription factor, MADS-box
CDDcd001201.15E-2471123No hitNo description
PRINTSPR004044.8E-177292IPR002100Transcription factor, MADS-box
PfamPF003192.8E-1980123IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-1792107IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-17107128IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MQGGIIPILL LESLTTDFVG HPVVPTLALF LLFCPHSLSS LPNRSFAFSV SGKDLRICLS  60
LRFTCSCAGM GRVKLKIKKL ENTNGRQATF AKRKHGIMKK ANELSILCDI DVVLLMFSPS  120
GKPSLCSRKH SLEEVITKLA QLTPQERAKR KLESLEALKK TFMKLDHDVN ISEFFGRSKS  180
TYEEVTNRAK MLQMQLSEVH TRLSYWTEPE KIDSIDDLGQ MENALRQSLD QVRAHKENMQ  240
QQQQQLIHLD GKNEIQSEMP LSFGMDSEQQ FQPLSWVHND GSMNISLQED PSLLHHREMA  300
CSASSSLGNY SGLFGTSKSP DLSNSGIENC VGSEFTGSCT DPNNLMMNSN NQYPSMAYNL  360
SFLNDPKLQQ LAEWNLLGSP ADYYVSQILE ASRPQFNMDS GNWASSASVI PCSVSGYDDP  420
LFSRQPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551435.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-101AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3CZA51e-142A0A0D3CZA5_BRAOL; Uncharacterized protein
STRINGXP_010551435.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-126AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]