PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G69540.1

Common Name

AGL94

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 344aa MW: 39220.8 Da PI: 7.1648

Description

AGAMOUS-like 94

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G69540.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.9	1.7e-20	11	53	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +n rq t++kRr+gi+KKA+ELS+LCd++v +++fs+ gk AT1G69540.1 11 LQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGK 53 568888**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.8E-27	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.058	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.30E-22	2	81	No hit	No description
SuperFamily	SSF55455	6.02E-24	2	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-16	12	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK 60 HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI DISKFLDRIS TPTVEVLSEK 120 IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM 180 SSQCKNQLQT EIDIDFGMEM EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA 240 SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP 300 ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK  60
HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI DISKFLDRIS TPTVEVLSEK  120
IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM  180
SSQCKNQLQT EIDIDFGMEM EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA  240
SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP  300
ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	186494148	0.0
Genevisible	256298_at	9e-77
Expression Atlas	AT1G69540	-
AtGenExpress	AT1G69540	-

Functional Description ? help Back to Top
Source	Description
TAIR	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G69540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G69540

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB115013	0.0	AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177113.3	0.0	AGAMOUS-like 94
TrEMBL	Q766C0	0.0	Q766C0_ARATH; AGAMOUS-like 94
STRING	AT1G69540.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14956	16	20
Representative plant	OGRP5946	11	19

Link Out ? help Back to Top
Phytozome	AT1G69540.1
Entrez Gene	843289
iHOP	AT1G69540
wikigenes	AT1G69540

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Pina C,Pinto F,Feij Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol., 2005. 138(2): p. 744-56 [PMID:15908605] Verelst W,Saedler H,Münster T MIKC* MADS-protein complexes bind motifs enriched in the proximal region of late pollen-specific Arabidopsis promoters. Plant Physiol., 2007. 143(1): p. 447-60 [PMID:17071640] Adamczyk BJ,Fernandez DE MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol., 2009. 149(4): p. 1713-23 [PMID:19211705]