PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24088.1 Da PI: 8.2881 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1e-36 | 14 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC +dC+++pyf +e+ p++fa++h+++Gasnv+kll ++p +r da+ s++yeAear++dPvyG+v++i++lqqq++ l+a+ XP_010551428.1 14 PCGACKFLRRKCLPDCIFSPYFSSEElgPARFAAIHRVYGASNVCKLLLNVPVRDRFDAVVSIAYEAEARLSDPVYGCVSHIFALQQQVAVLQAQ 108 7*********************9988778****************************************************************** PP DUF260 94 lallkee 100 + +lk++ XP_010551428.1 109 AMQLKAQ 115 9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.95 | 13 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-36 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MASSGNSVTV TGSPCGACKF LRRKCLPDCI FSPYFSSEEL GPARFAAIHR VYGASNVCKL 60 LLNVPVRDRF DAVVSIAYEA EARLSDPVYG CVSHIFALQQ QVAVLQAQAM QLKAQLAHHN 120 IAISEGTRHH TWQQTSGFPV NTTLYNPYGN VSPSPVSPQS SLESLDQSST SSDVSNVQER 180 RDGFRGLGFR EGYSDKRRSV THCNSDSGEL QALALRMMRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-37 | 12 | 108 | 9 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-37 | 12 | 108 | 9 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551428.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551428.1 | 1e-164 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 4e-94 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A3P6AEE1 | 2e-93 | A0A3P6AEE1_BRAOL; Uncharacterized protein | ||||
STRING | XP_010551428.1 | 1e-164 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-69 | lateral organ boundaries-domain 16 |