PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551186.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 425aa    MW: 47820.7 Da    PI: 8.8295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20241291256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  XP_010551186.1 241 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYILRGE 291
                     59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-32240300No hitNo description
SMARTSM003803.7E-37241304IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-23241299IPR016177DNA-binding domain
PROSITE profilePS5103222.919241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32241299IPR001471AP2/ERF domain
PfamPF008472.1E-13242291IPR001471AP2/ERF domain
PRINTSPR003672.1E-11242253IPR001471AP2/ERF domain
PRINTSPR003672.1E-11264280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEDQFPKMET NNFMHEDNKL LSSSSSLSKL LGVPRILDCL KSPPPPPPSS SPSSSPTSSP  60
VSEASNNMLS CPHHLQKASS PSCRFFKFSD EFNTSAQPHV ASSSPVPWNF LESFPHQTQS  120
QSQLQSRVSD HHPLPKPPNL NLFLQEPKFP DLSQTEYHNT NNGYNVSSFC KYHNFTPNLL  180
QSDKNQSQAI NEWIKINKTL TNHPSKGFGS YWLSATKTQP MKLTTGSSRK PNSNVQSPGK  240
LYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAMA YDTAAYILRG EYAHLNFPDL  300
KNQLKTSSLR NMIASLLESK IQQISSSHQA KSGDRNAAFD LEKVTQEKND MSESGLNARP  360
VKNLSQKLDF GERIIGVESG EVMIKEQDRQ EAMLSETEGV QLSRMPSLDM DMIWEALLVT  420
KPTPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21237298163ATERF1
3gcc_A6e-21237298163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551186.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ01e-112ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A078IX291e-111A0A078IX29_BRANA; BnaC04g55700D protein
TrEMBLA0A3N6Q9T71e-111A0A3N6Q9T7_BRACR; Uncharacterized protein
STRINGXP_010551186.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-86ERF family protein