PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550912.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 347aa    MW: 38304.9 Da    PI: 9.9772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31280337359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  XP_010550912.1 280 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEPSMLIVTYEGEHNHS 337
                     9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-17231276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33266338IPR003657WRKY domain
PROSITE profilePS5081129.677273339IPR003657WRKY domain
SuperFamilySSF1182906.41E-27276337IPR003657WRKY domain
SMARTSM007749.4E-38278338IPR003657WRKY domain
PfamPF031065.3E-27280336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDEIEAANKA AVESCHGVLT LLSQQPNDPK AVMVETREAF CRFKRVASLL TRGLGHGKIR  60
KINKFRSSLP QHIFLESPIC NSDVSSVCTQ VLAPKPLQVI PPPPAAAFVE IDPKQKLGPP  120
PLTLNHKICV NKSFLELKPP AFRVLDPKPS NPPYQLIHNH QQVVYSRSNS GVNLKFDASG  180
GCYTPSLSSN RSLGSFVSSL SMDGSVTEYD GNSFHLIGLP QSSDQISQHS RRTCSGRGEE  240
GSLKCGSRSK CHCSKKRKLR VKRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG  300
YYKCSSVRGC PARKHVERCV DEPSMLIVTY EGEHNHSRLM SSQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19271336771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550912.10.0PREDICTED: probable WRKY transcription factor 39
SwissprotQ9SR070.0WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD7L2W90.0D7L2W9_ARALL; WRKY DNA-binding protein 39
STRINGXP_010550912.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-169WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]