PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GATA | ||||||||
Protein Properties | Length: 225aa MW: 24297.4 Da PI: 10.1848 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.1e-18 | 142 | 176 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ tLCnaCG+++++ +l XP_010550844.1 142 CTHCGSEKTPQWRGGPAGPNTLCNACGVRFKSGRL 176 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.848 | 136 | 172 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.6E-16 | 136 | 186 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-15 | 138 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-14 | 140 | 174 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.68E-15 | 141 | 191 | No hit | No description |
Pfam | PF00320 | 3.2E-16 | 142 | 176 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 142 | 167 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKIVEEEDLE WISNEDAFPL FETFVEALPS DQRLRLMSSE NVAAFQFSPI TVLETRSCSS 60 TSLTSTTTTT TTNSSGSCDG SEAATAGGST AIMSCSGGLN VPVKARSKRR HPTRVDLPSV 120 STHHVETPPR KKRALDASGR KCTHCGSEKT PQWRGGPAGP NTLCNACGVR FKSGRLVPEY 180 RPANSPTFSP GLHSNSHRKV MKLMMQRQQV GKSSSPATRK TVNKG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550844.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550844.1 | 1e-166 | PREDICTED: GATA transcription factor 1 isoform X2 | ||||
Swissprot | Q8LAU9 | 2e-54 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A1J3EDR9 | 5e-58 | A0A1J3EDR9_NOCCA; GATA transcription factor 1 | ||||
TrEMBL | A0A1J3GHK4 | 5e-58 | A0A1J3GHK4_NOCCA; GATA transcription factor 1 | ||||
STRING | XP_010550843.1 | 1e-163 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-54 | GATA transcription factor 1 |