PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36067.8 Da PI: 5.8924 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.9 | 3.3e-56 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL++kv +k++++ +i e+d++k+ePwdL++k+k +ekewyfF+k+d+ky+tg r+nrat+sgyWkatgkdke+++ XP_010550286.1 16 LPPGFRFHPTDEEIITYYLTEKVMDKEFSA-IAIGEADLNKCEPWDLHEKAKMGEKEWYFFCKKDRKYPTGMRTNRATESGYWKATGKDKEIFRG 109 79*************************999.88**************999999*****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg lvg+kktLvf+kgrap+g+kt+Wvmhe+rl XP_010550286.1 110 KGLLVGMKKTLVFHKGRAPRGQKTNWVMHEFRL 142 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-63 | 12 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.054 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-29 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEDLESSDKG EELVELPPGF RFHPTDEEII TYYLTEKVMD KEFSAIAIGE ADLNKCEPWD 60 LHEKAKMGEK EWYFFCKKDR KYPTGMRTNR ATESGYWKAT GKDKEIFRGK GLLVGMKKTL 120 VFHKGRAPRG QKTNWVMHEF RLQGNLPFPN PNLFSKDEWV VCRIYHKPLA SAKKSPFGEQ 180 KLSSFHDNID SLFEFSSLPP LIDPSPSDRP GRSFYAGDPP EFKYTSAAPS LHPAQITAAT 240 NQCFIPYLMD QNPLTLSYQN PNEVGVPLLN GPKMEQMPSS SSTQSGVSVD VFSGHKNVSV 300 ETGESYEDFA DLLGNIWAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550286.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 1e-104 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A1R3KF58 | 1e-106 | A0A1R3KF58_9ROSI; No apical meristem (NAM) protein | ||||
STRING | XP_010550286.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 5e-94 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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