PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550283.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 751aa    MW: 83826.3 Da    PI: 9.1809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06236255525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+ffa+ G+C+ G +C+F+H
  XP_010550283.1 236 PCKFFAA-GHCRNGKNCRFSH 255
                     7**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.793231258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6233256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MSGSNRKRSS RWDFKEEPEH LNSNARGDDY PGKSGSYFRD KESEPGLSYT EGNGRNDSKR  60
LDDGEHLKAK HENRQHSGEA WPRSRVSHSG DGMIGYYDRQ SPVRDRHNDS RSRSRSRSRS  120
PVHRVKREAG PYDKQKSRAR VSPQASRDFD GRYKRGGDFQ SDQNADPGWE ARNKKARDSK  180
YYTDDSREQA IRGGRSDYST DYPEDDLRRE KRHLHEGTSD PVLRRHRNER EFSNIPCKFF  240
AAGHCRNGKN CRFSHHGAAR GSPDRKPKEN LFGQDNNHSG AEKFQNGPRW NGFEKADAGK  300
SGDVGTARAN TSISQPKVNE SWINDMEMSP DWDYGVKTFN KPSKDEHSEV KDGLWSHSSA  360
ILPQNVKAGN SYFQQDGNHR SSSAFSYGDK PVNNYKNTVN VAPIQTSDQD NFNHSALRNQ  420
NSLAVGGSQV ITSAINLPGG LNSSNPENGK GYQENLSVEK PVSGDLESSK GMFNNANSAT  480
HNNATPEELN HISNISASLA QFFGNGQPLP HHFSTLTPQT AMQVPLHTES EGYGKQQSSV  540
GIQPNQAAMF HSHNNPVINL IQQKGNEMNT GAGAVQAVTT PQTINTDAQQ HDSSVPSAFL  600
GIGSETEPVD TSHKQDENPK VTEEKKDKKT EESSKEEDGK KTYEESEDAE NAEEDDKADG  660
NKKGKDPKGI RAFKFALVET VKEILKPFWR EGRMSKDAYK NIVKKVVDKV TGTMQNGNVP  720
QTQEKIEHYL SASKPKLTKL VQAYISKVKK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550283.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLD7KD690.0D7KD69_ARALL; Predicted protein
STRINGXP_010550283.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-18C3H family protein