PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549664.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 418aa MW: 46523.3 Da PI: 5.6428

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7.4e-34	207	261	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+lm+ +gLt++hvkSHLQkYR+ XP_010549664.1 207 KQRMRWTPELHESFVEAVNQLGGSERATPKAVLKLMNNPGLTIYHVKSHLQKYRT 261 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-18	206	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-31	207	263	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-24	207	261	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-11	209	260	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	298	343	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MNNPVPCQAS PLVSGGDSGG RLFSPSSGFC SGMHVSSVSS HERNSQTQPS VSTMPRERAL 60 SRVAGEGQIQ DCPLEIQSQS LISHSQEQKD MPWCADPMQG FFDFPDHVPI QNPPAESSRG 120 MVSSEDLHKK SEWQEWADHL ISVDDGLEPN WSELLGDPSL QNHDSKISPQ SSDIPREEVK 180 IKQHQTVVSS GEQFSGKNSS SSAPPLKQRM RWTPELHESF VEAVNQLGGS ERATPKAVLK 240 LMNNPGLTIY HVKSHLQKYR TARYKPESSE GTEGEPSEKK LTSIEDIKSL DLKTSIGITE 300 ALRLQMEVQK RLHEQLEIQR KLQLQIEEQG RYLQKMFEKQ QKMQDNQNKG PNPDDDDDDP 360 SAPLQDQSSP SPKKSDSSGS QPRQDNVASR KEKKGDGFSS ADEDRSSSSP SKKRARED

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MNNPVPCQAS PLVSGGDSGG RLFSPSSGFC SGMHVSSVSS HERNSQTQPS VSTMPRERAL  60
SRVAGEGQIQ DCPLEIQSQS LISHSQEQKD MPWCADPMQG FFDFPDHVPI QNPPAESSRG  120
MVSSEDLHKK SEWQEWADHL ISVDDGLEPN WSELLGDPSL QNHDSKISPQ SSDIPREEVK  180
IKQHQTVVSS GEQFSGKNSS SSAPPLKQRM RWTPELHESF VEAVNQLGGS ERATPKAVLK  240
LMNNPGLTIY HVKSHLQKYR TARYKPESSE GTEGEPSEKK LTSIEDIKSL DLKTSIGITE  300
ALRLQMEVQK RLHEQLEIQR KLQLQIEEQG RYLQKMFEKQ QKMQDNQNKG PNPDDDDDDP  360
SAPLQDQSSP SPKKSDSSGS QPRQDNVASR KEKKGDGFSS ADEDRSSSSP SKKRARED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-28	207	265	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00532	DAP	Transfer from AT5G29000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549664.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549657.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X1
Refseq	XP_010549659.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Refseq	XP_010549660.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Refseq	XP_010549661.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Refseq	XP_010549662.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Refseq	XP_010549663.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Refseq	XP_010549664.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X3
Swissprot	F4J3P7	1e-160	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A178VHS9	1e-158	A0A178VHS9_ARATH; Uncharacterized protein
STRING	XP_010549657.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	1e-147	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]