PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010549659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | G2-like | ||||||||
Protein Properties | Length: 418aa MW: 46523.3 Da PI: 5.6428 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.5 | 7.4e-34 | 207 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+lm+ +gLt++hvkSHLQkYR+ XP_010549659.1 207 KQRMRWTPELHESFVEAVNQLGGSERATPKAVLKLMNNPGLTIYHVKSHLQKYRT 261 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-18 | 206 | 261 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-31 | 207 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-24 | 207 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-11 | 209 | 260 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-23 | 298 | 343 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MNNPVPCQAS PLVSGGDSGG RLFSPSSGFC SGMHVSSVSS HERNSQTQPS VSTMPRERAL 60 SRVAGEGQIQ DCPLEIQSQS LISHSQEQKD MPWCADPMQG FFDFPDHVPI QNPPAESSRG 120 MVSSEDLHKK SEWQEWADHL ISVDDGLEPN WSELLGDPSL QNHDSKISPQ SSDIPREEVK 180 IKQHQTVVSS GEQFSGKNSS SSAPPLKQRM RWTPELHESF VEAVNQLGGS ERATPKAVLK 240 LMNNPGLTIY HVKSHLQKYR TARYKPESSE GTEGEPSEKK LTSIEDIKSL DLKTSIGITE 300 ALRLQMEVQK RLHEQLEIQR KLQLQIEEQG RYLQKMFEKQ QKMQDNQNKG PNPDDDDDDP 360 SAPLQDQSSP SPKKSDSSGS QPRQDNVASR KEKKGDGFSS ADEDRSSSSP SKKRARED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-28 | 207 | 265 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010549659.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010549657.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X1 | ||||
Refseq | XP_010549659.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_010549660.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_010549661.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_010549662.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_010549663.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_010549664.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Swissprot | F4J3P7 | 1e-160 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | A0A178VHS9 | 1e-158 | A0A178VHS9_ARATH; Uncharacterized protein | ||||
STRING | XP_010549657.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 1e-147 | G2-like family protein |
Publications ? help Back to Top | |||
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