PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010549567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 22996.2 Da PI: 9.3438 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.1 | 3.5e-16 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i k r +tfskR+ gi KK ELS+LC+a++a ++fs g+ +++ XP_010549567.1 16 KIVKKNDRMITFSKRKSGIYKKIIELSTLCGADIAFLVFSAAGNPFTF 63 6778899************************************98888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.876 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-23 | 8 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-19 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTMKKTKGRQ KIDIKKIVKK NDRMITFSKR KSGIYKKIIE LSTLCGADIA FLVFSAAGNP 60 FTFGSPSFEA VVERFGEGGG GGGGGDGSRK DDDSSPFQRT ILDAHKKIRL NELSKQYTSL 120 VDELDAEKER MKTLPTPAPV VETKEWWRIE PAEIPNDEIL GQLLYKFEDL YENLRNIMEQ 180 RIREGFPSSS SSNMNVQGFG NGHII |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010549567.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010549567.1 | 1e-150 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
STRING | XP_010549567.1 | 1e-150 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 7e-43 | AGAMOUS-like 64 |