PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549566.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22879.2 Da    PI: 10.0597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-171663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i  +  r +tfskRr gi KK +ELS+LC+ae+a ++fs  g+ +++
  XP_010549566.1 16 KITRENDRMTTFSKRRSGIYKKINELSTLCGAEIAFLVFSAAGNPFTF 63
                    6777889************************************98888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.969767IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-24883IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-18929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMKKKTKGRQ KIEIKKITRE NDRMTTFSKR RSGIYKKINE LSTLCGAEIA FLVFSAAGNP  60
FTFGSPSFES VSKRFFGNEN RLQTRQNNNN ASLPLDISLI HAPKNTRLDE LSRRYCDLID  120
NLDAEKERMK ALTPLMNRGR KMETVEEEWW RTEPTEIKDE EVLVRLIMKF EELYENLSGL  180
LEQRSRTCSS SHLHGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549566.11e-144PREDICTED: agamous-like MADS-box protein AGL62
STRINGXP_010549566.11e-143(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-45AGAMOUS-like 64