PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010549548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19588 Da PI: 4.6029 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.2 | 3.4e-11 | 2 | 45 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ien + tfskRr gi KK + L v Cdae+ ++f + + XP_010549548.1 2 KKIENVEDKLSTFSKRRSGIYKKSNDLIVTCDAEIGFLMFTEAD 45 6899**********************************998865 PP | |||||||
2 | HLH | 13.2 | 0.00017 | 78 | 113 | 5 | 41 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKa 41 + +rE+ R dr+N+ +e+L + l + +K l+K XP_010549548.1 78 ADAREKERIDRMNEEYENLLDELEGeR---ERRKaLEKL 113 568****************99988855...555557775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.27E-16 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.306 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-8 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-14 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKKIENVEDK LSTFSKRRSG IYKKSNDLIV TCDAEIGFLM FTEADTPFSF GHPSIETVSD 60 KLRNPLPPHT KNASSSLADA REKERIDRMN EEYENLLDEL EGERERRKAL EKLSEEKKIE 120 ECWFKAPVEK LNGDEIQLMH DTFLEFHEAL CDELFNRLSI NDEGTSSIQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010549548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010549548.1 | 1e-121 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
STRING | XP_010549548.1 | 1e-121 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 3e-30 | AGAMOUS-like 57 |