PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549480.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20676.4 Da    PI: 4.8422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161463150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k++en+  r +tfskRr gi+KK +EL + Cdaev  ++fs+ g+ +++s
  XP_010549480.1 14 KKVENEEDRMITFSKRRSGIFKKINELVTSCDAEVGFLVFSQVGTPFTFS 63
                    678******************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.792666IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-22665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-22778IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.2E-191562IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVKTTKGKQK IDMKKVENEE DRMITFSKRR SGIFKKINEL VTSCDAEVGF LVFSQVGTPF  60
TFSHPSMEVV ANRFTNPKRQ TPRDNAQIVG EAYRKQRIEE LSETYEKLAE EVEEEKEKQK  120
ALEDLVEEKK LDTFWWKTPI EGMNEDDRTL VHDTFVELHD GLCDLLAERL RLASDDSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549480.11e-129PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
TrEMBLQ9M8W62e-54Q9M8W6_ARATH; AGAMOUS-like 57
STRINGXP_010549480.11e-129(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-53AGAMOUS-like 57