PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549187.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24456 Da    PI: 6.0604
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-1428671150
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      f +R +++  KA ELSvLCd+ v+vi + s+g+l+ ++
  XP_010549187.1 28 GAFERRVQTLKNKARELSVLCDTSVCVICYDSDGQLHHWP 67
                    57899999*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0013969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-1518100IPR002100Transcription factor, MADS-box
CDDcd002669.11E-162994No hitNo description
PROSITE profilePS5006610.9193070IPR002100Transcription factor, MADS-box
PfamPF003191.2E-113066IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRGGLGRTE VGKHRRRRAE RRSSRSGGAF ERRVQTLKNK ARELSVLCDT SVCVICYDSD  60
GQLHHWPERP EDVRRIAANY RGLSEEDRQK HAVDLNGFLS SEATKANRAS KKPRLAPAYP  120
DSDGTVDNLS DDELGVLLSR IDAKLVQFQE RQSLVMDHGG RTEKDFEGRN EDVGSEKSAT  180
GPRGEENTDE IDIFRGLEDL DCGFQGFGFE SFGGSSMYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549187.11e-160PREDICTED: agamous-like MADS-box protein AGL103
STRINGXP_010549187.11e-160(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-21AGAMOUS-like 103