PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549144.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 295aa    MW: 32488.6 Da    PI: 7.3829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07752444
                     S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrw 44
                     W+ eE++ + +a++++  +      +W++   +++  ++l+++k+++
   XP_010549144.1  7 WSREEEKAFENAIAMHSVEeeitedQWRKMELMVP-SKCLEELKNHY 52
                     *****************************999999.**********9 PP
2Myb_DNA-binding391.9e-12128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_010549144.1 128 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 172
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-4358IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-7663IPR009057Homeodomain-like
CDDcd001677.85E-6756No hitNo description
PROSITE profilePS500906.307756IPR017877Myb-like domain
PROSITE profilePS5129416.873121177IPR017930Myb domain
SuperFamilySSF466897.11E-17123178IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17125175IPR006447Myb domain, plants
SMARTSM007172.3E-10125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11126171IPR009057Homeodomain-like
CDDcd001679.64E-10128173No hitNo description
PfamPF002497.2E-11128172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MESVVGWSRE EEKAFENAIA MHSVEEEITE DQWRKMELMV PSKCLEELKN HYEILLEDVN  60
AIESGHVPLP CYSGGGQTDI DEPVNSPSSR DAHSSGSPAP EKRPNPGMSA SGGRGSSRAE  120
QERRKGIPWT EEEHRLFLLG LDKFGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN  180
RDRRRSSIHD ITTVNNQNQA AVTGQQVAKH RVAQPQLQLP ATTMPPGIGM YGGAPMGQPI  240
VAPPGHVGSA VGTPVMLPPP HHHHHHHHPG APYVVPVYPV PPPPLPPHPA PPTRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-127821184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549144.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549142.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010549144.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN64e-76SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A397YU191e-127A0A397YU19_BRACM; Uncharacterized protein
STRINGXP_010549142.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.19e-98MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]