PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548871.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 296aa    MW: 34245.4 Da    PI: 6.5207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-11241001396
                     TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++ l +p +f++++ +g +ee++t  + d s r+Wevk+  ++++    +++ Wk+Fv ++g ++g++ +F+ +g+ +  ++v+ 
  XP_010548871.1  24 HH-LDMPVNFFKKNvEGRHEEKTTTLVSDVSDRKWEVKI--DGRR----FADDWKDFVVDHGFRVGES-IFRQEGEGDLGFHVTG 100
                     44.899*********77888888999999**********..9998....99****************9.5665666666666665 PP
2B342.41.2e-131952771297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +   +l  +f+++++++  +++ +tl d++  +W ++l+ +kk g++vl+kG k+F+ an Lkeg+++  +l++ +++++v+k+ 
  XP_010548871.1 195 PHEFKRLLTQFTRANNIE--RPRNITLVDKHRVEWPINLSKEKKTGKMVLGKGLKSFCIANVLKEGESFEMELIS-RNATPVLKFS 277
                     4445567789**999877..6678***************99********************************98.5566777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-138106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-139110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.92411104IPR003340B3 DNA binding domain
CDDcd100171.20E-1012101No hitNo description
SMARTSM010198.0E-1114104IPR003340B3 DNA binding domain
PROSITE profilePS508639.22184279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-14184278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-13186276No hitNo description
SMARTSM010191.6E-14188280IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-13189276IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-13194278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTDMKFHSSK KPHFFQPLLP GFYHHLDMPV NFFKKNVEGR HEEKTTTLVS DVSDRKWEVK  60
IDGRRFADDW KDFVVDHGFR VGESIFRQEG EGDLGFHVTG FGPSCCNLVY SSSRSDDENG  120
GLEEEEEDYD DSEEEDAIDE KNSGIRLREK RTTKKKKNPP HEPKGNPSTG PNSNKEIRSG  180
ECSEEMKFMT LTFTPHEFKR LLTQFTRANN IERPRNITLV DKHRVEWPIN LSKEKKTGKM  240
VLGKGLKSFC IANVLKEGES FEMELISRNA TPVLKFSSEV NTQNNIWASR FLDRFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548871.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548871.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM10-like
STRINGXP_010548871.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-42B3 family protein