PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548552.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 989aa    MW: 111503 Da    PI: 10.4051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-161699396
                    EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    + l+p ++l    l +p +f++++ +gk+e++    + d s r+W+vkl  ++++    +t+GWk+F+++++ ++gDfvvF+++g+  f  +v+ 
  XP_010548552.1 16 QPLLPGYHLH---LNIPVTFFKKNiEGKHENKGATLISDVSHRTWKVKL--DGRR----FTDGWKDFADDHDFRTGDFVVFRHEGDLVF--HVTG 99
                    5554544444...56*********955544444555578**********..9998....9**********************8876555..6655 PP
2B362.75.8e-20382470494
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     v ++ + l +++  lp kf +++ ++ + s +++l+d +grsW  +l+++k+ +r ++ +GWk+F+++n+L+ gD+++Fkl+++ +++  v+
  XP_010548552.1 382 VSVTDSGLHRDIGFLPMKFKRSIFLE-NLSCEIVLMDDHGRSWPSNLRITKSFSRAYINGGWKRFCQENRLRGGDSCTFKLVQNgTKT--VL 470
                     56777888888889*********776.5788**************************************************9963333..44 PP
3B351.32.1e-16536625799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +  ++ +g ++lpkkf++e+g++k++  ++tl d++g +W  ++ ++k+ +r+ l+kG + F +ang+   D++v++l++ +++++ +k+f+k
  XP_010548552.1 536 TLKNFVRGYVRLPKKFTRENGIDKPG--MMTLLDKDGVEWLTNYWMEKSNRRMHLGKGSRAFFRANGVAKDDSFVLELIW-RDKTPILKFFSK 625
                     5667778899***********99766..8***************779999999***************************.566699999886 PP
4B354.22.7e-17748829486
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     + +++ +l+++ l+lpk+f++++g+++++  ++ l++e+g  We  l+ rk  gr+ + +GW++F+ ang k   f++Fkl+ 
  XP_010548552.1 748 ARVTPANLRKDELYLPKSFIRSNGLENRCC-EILLMNEQGIWWESILRSRKDNGRVHIYGGWRSFCCANGQKPDSFCTFKLVL 829
                     5678899999*************9998775.*************************************************873 PP
5B344.62.5e-149079881499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     grl+lp +f++e+ +++ +   ++l  + g +W ++l  ++k+ ++ l+kGW+eF +angLk + ++v++l+++ +  +++k++++
  XP_010548552.1 907 GRLRLPIPFTRENRIEPGQ---IILVGRGGAKWPINLMKENKRPQMSLGKGWREFREANGLKPNVTFVLELIWQ-GSIPLLKLCSH 988
                     799**********887655...***************888888889**************************95.44478888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-216105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-207105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.81511103IPR003340B3 DNA binding domain
CDDcd100173.54E-1612100No hitNo description
SMARTSM010191.1E-2114103IPR003340B3 DNA binding domain
PfamPF023623.1E-112592IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-11148247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-12149247IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-8152246No hitNo description
SMARTSM010196.8E-11153248IPR003340B3 DNA binding domain
PfamPF023623.5E-9158247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-22372476IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-22374478IPR015300DNA-binding pseudobarrel domain
CDDcd100173.52E-20378472No hitNo description
PROSITE profilePS5086315.002379475IPR003340B3 DNA binding domain
SMARTSM010191.6E-22380476IPR003340B3 DNA binding domain
PfamPF023621.9E-18382469IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15527622IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16530624IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.502530626IPR003340B3 DNA binding domain
CDDcd100172.93E-14531624No hitNo description
SMARTSM010196.0E-17532626IPR003340B3 DNA binding domain
PfamPF023627.6E-16535625IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16738828IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-17741833IPR015300DNA-binding pseudobarrel domain
CDDcd100173.32E-15745834No hitNo description
PROSITE profilePS5086312.055745842IPR003340B3 DNA binding domain
SMARTSM010196.8E-20746840IPR003340B3 DNA binding domain
PfamPF023624.0E-16747829IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-13892987IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.87894988IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-14895987IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-18896989IPR003340B3 DNA binding domain
PfamPF023625.6E-13907988IPR003340B3 DNA binding domain
CDDcd100172.34E-13907987No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MANPKASSPS KPHFFQPLLP GYHLHLNIPV TFFKKNIEGK HENKGATLIS DVSHRTWKVK  60
LDGRRFTDGW KDFADDHDFR TGDFVVFRHE GDLVFHVTGF GPSCCNLQYA PFSLDDDDRE  120
DNAIKNRSSK EKKSSEGGPK EKERVPSPRA NPSVTLTLKP NSLTKGLRFP IHFTRQNFIV  180
KPGKVTLLDK NGGELSSNFF SERDGTMRLG ICGLRGFFGA NAVKEGESFT LELIRRDTTP  240
VLKFCSKTHQ HQNRAAAESP IPNKTQTRKR VRIGGPILDP VGEKESKHRE HGSMDVTSSI  300
GSKENSCRAQ TFSDADNELA EAKHETVNTL GQFPDVPAKE EENPVVLSQK PDDFGNLPKK  360
KKMKRGPKTE AESSPDHPCF VVSVTDSGLH RDIGFLPMKF KRSIFLENLS CEIVLMDDHG  420
RSWPSNLRIT KSFSRAYING GWKRFCQENR LRGGDSCTFK LVQNGTKTVL RLSPKECSSS  480
KEECSKAKVE KGHSKKQSSK ENSQSGECSK SEEEKQTRLR RRVSPPSSRN CFVTLTLKNF  540
VRGYVRLPKK FTRENGIDKP GMMTLLDKDG VEWLTNYWME KSNRRMHLGK GSRAFFRANG  600
VAKDDSFVLE LIWRDKTPIL KFFSKIDRSE ESLVQKNILT RKRVRDGGHV LDPARGKRSK  660
HQENGPMGSS SSSRGTAETS RRSQSLSASN QVAKAEQKVP EVPVKEEQNQ RASLCESDAF  720
VNLLRKKRVD GNPKIEAESS EDHSCFVARV TPANLRKDEL YLPKSFIRSN GLENRCCEIL  780
LMNEQGIWWE SILRSRKDNG RVHIYGGWRS FCCANGQKPD SFCTFKLVLG GTKLALLRLP  840
STGSDGNSIS KTCTESIEKK AVDANTRTRE KNPKRKEKTR IMQRASSDSS PCRNPFVALT  900
PTPKCVGRLR LPIPFTRENR IEPGQIILVG RGGAKWPINL MKENKRPQMS LGKGWREFRE  960
ANGLKPNVTF VLELIWQGSI PLLKLCSHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548552.10.0PREDICTED: putative B3 domain-containing protein REM15
STRINGXP_010548552.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.17e-50B3 family protein