PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 30732.4 Da PI: 8.7421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 2e-10 | 163 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_010548286.1 163 SHSLAERARREKISERMKILQDLVPGC----NKVFGKALVLDEIINYIQSLQ 210 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-18 | 157 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-9 | 157 | 214 | No hit | No description |
PROSITE profile | PS50888 | 15.631 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-18 | 159 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-8 | 163 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDPGGMMNGG GPCNTSEIWQ FPRNGAPPMN SSIRGDGVPF DGPNLAQQFA GSNPNGTTTC 60 GGGPARLRNA LPPQARVARK RREATEDEAA KVVSTSNGNG AVGVCWKDDD SKRQKTGRCG 120 DVGHGWKTEE ETAGKGVEEK KQTAESPKDY IHVRARRGQA TDSHSLAERA RREKISERMK 180 ILQDLVPGCN KVFGKALVLD EIINYIQSLQ RQVEFLSMKL EAVNSRIAPG LDVLPPKELA 240 QQQFESSGLR SGLQPPRDYS RGESPEWLHL HMQLGGGFER TS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548286.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548286.1 | 0.0 | PREDICTED: transcription factor BPE isoform X2 | ||||
Swissprot | Q0JXE7 | 3e-81 | BPE_ARATH; Transcription factor BPE | ||||
TrEMBL | V4KDL1 | 1e-111 | V4KDL1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010548267.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 7e-91 | BIG PETAL P |
Publications ? help Back to Top | |||
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