PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547980.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 319aa    MW: 35602.6 Da    PI: 8.0031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+q+G ++W+ I++ ++ gR++k+c++rw + 
   XP_010547980.1 11 KGPWSPEEDQLLRRLVQQHGARNWTGISKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding59.95.6e-1965107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde++v+a+ ++G++ W+tIar+++ gRt++ +k++w++ 
   XP_010547980.1  65 PFTAEEDEIIVRAHVEHGNK-WATIARRLN-GRTDNAVKNHWNST 107
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.821661IPR017930Myb domain
SuperFamilySSF466891.8E-318104IPR009057Homeodomain-like
SMARTSM007177.5E-171059IPR001005SANT/Myb domain
PfamPF002492.9E-191156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-261264IPR009057Homeodomain-like
CDDcd001671.31E-151355No hitNo description
SMARTSM007174.0E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129420.50763112IPR017930Myb domain
PfamPF002491.2E-1565107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2365111IPR009057Homeodomain-like
CDDcd001672.31E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADQKNLDRV KGPWSPEEDQ LLRRLVQQHG ARNWTGISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRPFTAEE DEIIVRAHVE HGNKWATIAR RLNGRTDNAV KNHWNSTLKR RFSAMAMENG  120
AISEDDGYHL ADKKQRLSPK PLISSPIEAD PKPKAPVSNP CLLPPRNGDG SPRSDVTDSN  180
QDAISPEAVT KSTSPPSIHG DPPSENETNV VSAEDRNRER ETEKVNEKVS TELTLSLPWT  240
ESNNTNSTRV NSAAMKEEED SDKGTTETRR GSMFGSEFMA VVQEMIREEV RSYMRAKGKR  300
DGGGVINAGI KRVEINKNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3681124108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547980.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A251MZK24e-81A0A251MZK2_PRUPE; Uncharacterized protein
TrEMBLM5VUC33e-81M5VUC3_PRUPE; Uncharacterized protein
STRINGXP_010547980.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-73myb domain protein 73