PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547280.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 461aa    MW: 52215.3 Da    PI: 10.4989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-071244336
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      W t+E++ll+ av ++G+g+W+ +a ++   R+
   XP_010547280.1 12 EWGTWEELLLAGAVLRHGSGDWDVVAGELR-SRS 44
                     6****************************9.888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.2E-61244IPR001005SANT/Myb domain
SuperFamilySSF473702.22E-17244356IPR001487Bromodomain
SMARTSM002972.1E-16249357IPR001487Bromodomain
CDDcd043691.78E-14256350No hitNo description
Gene3DG3DSA:1.20.920.102.0E-15256368IPR001487Bromodomain
PfamPF004392.1E-10262341IPR001487Bromodomain
PROSITE profilePS500149.711268338IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVVMMMMVTA TEWGTWEELL LAGAVLRHGS GDWDVVAGEL RSRSLFPDNF TPQICKAKYE  60
DLHHRYSGCK AWFEELKKKR MAELRAALQK SEDSIGSLES KLQNLKAEQD DECQNDYDSS  120
RTVSAEPFQK SDGPECTSKD TSRDLSSAGS FTQQAPTSNW SPDPKLETLV IEQDKNSHVE  180
KVFGTVFGGQ VLPSMRKRRG KRKRKDLSKD VKELSPFVRD IVLDSSMEMA SFSRCKEAST  240
SNSCPRNQTR GHEILVLDEL MRIYNTISRN ECASVFRRRL DSQKRGRYKK LVRRHMDFDM  300
IQSRITNRSI SSAKELFRDL LMVANNASFF YSKNTREHKS AVSLRDIVTK SLRQYLIEED  360
EKIWKAPLKQ TSSSSSSTRK PRTGQSLKTR FGKTSHVSHD VIKTASGGKR TFGTDSPPPV  420
KPAAAAAKKG SSAMAAAAAR RLEGKQRNQR INWNALKQRP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205RRGKRKRKD
2277290RRLDSQKRGRYKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547280.10.0PREDICTED: uncharacterized protein LOC104819085
TrEMBLD7KW341e-167D7KW34_ARALL; Uncharacterized protein
STRINGXP_010547280.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.15e-28DNA-binding bromodomain-containing protein