PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546780.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 346aa    MW: 39131.6 Da    PI: 8.0363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_010546780.1 14 KGLWSPEEDEKLLNHITRYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding506.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+ l++++++ lG++ W+ Ia +++ gRt++++k++w++
   XP_010546780.1  67 RGAFSREEENLIIELHAVLGNR-WSQIATRLP-GRTDNEIKNFWNS 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-27664IPR009057Homeodomain-like
PROSITE profilePS5129417.291961IPR017930Myb domain
SuperFamilySSF466895.24E-2912108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001677.46E-111761No hitNo description
PROSITE profilePS5129427.01562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2665116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002498.6E-1567111IPR001005SANT/Myb domain
CDDcd001679.94E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRHSCCYEQ KLRKGLWSPE EDEKLLNHIT RYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SREEENLIIE LHAVLGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG  120
IDPVTHKPLN ELQCNHSTDQ QKQQARPESE RSSLSGQPNL VETVVKSTFS TNPRENTTVA  180
VQSSGLWWFP MAMTQNPSFG FSSNSSSSSM AVSDMVSCLS SMSSPTPPQS SNFSVPNNWE  240
LNYGSVQSQS NSIFSSFFGN TEAQMNPVED IKWASEFLHY ATENQSSDDV FITEVKPDIH  300
AISHHQHGSS NSHWRINQLQ EAAAQGSDDV YGKDLRRLTM AFDQTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546780.10.0PREDICTED: transcription factor MYB86
SwissprotQ8LPH61e-124MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A087G9791e-123A0A087G979_ARAAL; Uncharacterized protein
STRINGXP_010546780.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-110myb domain protein 86