PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 32660.1 Da PI: 9.2306 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.5 | 2.5e-21 | 111 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge XP_010546408.1 111 LYRGVRQRH-WGKWVAEIRLPKK---RTRLWLGTFDTAEEAALAYDQAAFKLRGE 161 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-33 | 110 | 170 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-23 | 111 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.261 | 111 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-32 | 111 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-15 | 112 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAAALNSNSC REEFMKALAP FMKTSCSSSK PSLTHKSTNQ PEPVSNHVLQ TGPIGLNQLT 60 PAQILQIQIE FQNQNQVHGK GRDLYLLAAK PIPMKNTVAA ASSVVRKPAK LYRGVRQRHW 120 GKWVAEIRLP KKRTRLWLGT FDTAEEAALA YDQAAFKLRG EFSRLNFPYH TRRRDYKPFP 180 PSVNKKIQAI FDDVTPPEFQ IPARTDAGLS GFYETDPVMP KLEQEPSFPE KTEPGYPNDR 240 FVPESDKTFL DFSNDWTWDE RTSFGLEKYT SMEIDWDAVA KVSEWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 109 | 168 | 3 | 63 | ATERF1 |
3gcc_A | 2e-19 | 109 | 168 | 3 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546408.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546408.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
Swissprot | Q9FJQ2 | 1e-76 | ERF57_ARATH; Ethylene-responsive transcription factor ERF057 | ||||
TrEMBL | A0A0D2ZR39 | 1e-82 | A0A0D2ZR39_BRAOL; Uncharacterized protein | ||||
STRING | XP_010546408.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13499 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 4e-69 | ERF family protein |
Publications ? help Back to Top | |||
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