PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546398.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 365aa    MW: 41370 Da    PI: 8.464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.6e-1178115340
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                      +k +rr+++NReAAr+sR+RKka++++Le+   +L +
  XP_010546398.1  78 TDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQ 115
                     5899**************************86555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-776158IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96778122IPR004827Basic-leucine zipper domain
PfamPF001709.4E-879109IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.98E-780120No hitNo description
CDDcd147082.90E-2180132No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-781123No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
PfamPF141443.0E-31166241IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNTTSTHFVP PRRVGMYEPL HQMGMWGESF KGNGSLNMPS PIIVPSNPKL DNLSEDTSHG  60
TAGTPHKFDQ EASTSRHTDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIQLEQEL  120
ERARQQGFYV SGGVDTGSLG FSGNMNTAIA AFEMEYGHWV EEQNRQICEL RAGLSGHVSD  180
IELRILVDSV MKHYFELFRM KSSAAKSDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL  240
LPHLDVLTEQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGQLG EGSYIPQMNS  300
AMERLEALVS FINQADHLRH ETLQQMYRIL TTRQAARGLL ALGEYFQRLR ALSSTWATRQ  360
RDATT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546398.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546397.10.0PREDICTED: transcription factor TGA1
RefseqXP_010546398.10.0PREDICTED: transcription factor TGA1
RefseqXP_010546399.10.0PREDICTED: transcription factor TGA1
RefseqXP_010546400.10.0PREDICTED: transcription factor TGA1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A1J3CH790.0A0A1J3CH79_NOCCA; Transcription factor TGA1
STRINGXP_010546397.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]