PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010545666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 350aa MW: 37721.2 Da PI: 9.7991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40 | 8.8e-13 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++lG+g+W+ I++ + Rt+ q+ s+ qky XP_010545666.1 120 PWTEDEHRLFLVGLQKLGKGDWRGISKSYVTSRTPTQVASHAQKY 164 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 8.1E-4 | 2 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.215 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.58E-17 | 115 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-18 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.4E-10 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 117 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.4E-11 | 120 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.16E-9 | 120 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPT RGGGGGSPVA AVKLFGVRLT DGSIIKKSAS MGNLSALAAA 60 AAAQHHHHLP SFPTASMNRD SPLSGQVRDA THRTDGYLSD DPAHGSGSSH RRGERKKGVP 120 WTEDEHRLFL VGLQKLGKGD WRGISKSYVT SRTPTQVASH AQKYFIRQSS SSRVKRRSSL 180 FDMVTDDMVI EALPGKEDRA FHLSPSLEPE NSISLPSLDL SLGTAEREPA STASQDRTKE 240 PKDEINPSNG LSPMLVPGIF PSCVPLNYKL WFPTASTSPL GQGYGLEATT QHQVLKPNPG 300 FSKERANVDQ LVGMLQLRIG EAEGNKREPS SAFHPNGSDL NQGNSAIQAL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010545666.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010545666.1 | 0.0 | PREDICTED: myb-like protein J | ||||
TrEMBL | R0HYV3 | 1e-138 | R0HYV3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010545666.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9313 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-132 | MYB_related family protein |