PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545404.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 167aa    MW: 18454.8 Da    PI: 9.4139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-3283141159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r  +dp++v++tYeg Hnh+
  XP_010545404.1  83 LDDGYRWRKYGQKSVKNNVHPRSYYRCTYHTCNVKKQVQRLVKDPSIVVTTYEGIHNHP 141
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3270141IPR003657WRKY domain
SuperFamilySSF1182903.14E-2877142IPR003657WRKY domain
PROSITE profilePS5081128.23178143IPR003657WRKY domain
SMARTSM007744.1E-3783142IPR003657WRKY domain
PfamPF031068.2E-2684141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEGGDPMLAL DNPFMSSSPP LLMTASFSGE TAGASSSFSP ENLPDNGGGG GRGEGVKINK  60
GKGKRSAATP RIAFHTRSVD DVLDDGYRWR KYGQKSVKNN VHPRSYYRCT YHTCNVKKQV  120
QRLVKDPSIV VTTYEGIHNH PCEKLMETLS PLLRQLQFLS TVSEFHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2473140774Probable WRKY transcription factor 4
2lex_A1e-2473140774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545404.11e-124PREDICTED: probable WRKY transcription factor 43 isoform X1
SwissprotQ8VWQ47e-70WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLM4EFW27e-72M4EFW2_BRARP; Uncharacterized protein
STRINGXP_010545404.11e-123(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.13e-72WRKY DNA-binding protein 56